Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00037.1Hypothetical protein. (585 aa)    
Predicted Functional Partners:
AKJ00035.1
Hypothetical protein.
   
 
 0.670
AKJ05638.1
Nitrate reductase cytochrome c550-type subunit.
  
  
 0.654
AKJ00036.1
Hypothetical protein.
       0.640
AKJ00034.1
Response regulator.
       0.637
AKI98766.1
Molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.567
AKJ01772.1
Molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.567
AKJ07148.1
Molybdopterin oxidoreductase.
  
 
 0.567
AKI98892.1
Cytochrome c552 precursor; Belongs to the cytochrome c-552 family.
  
 
 0.456
AKJ03087.1
Cytochrome c family protein.
  
 
 0.456
AKJ01792.1
Type cbb3 cytochrome oxidase biogenesis protein CcoG.
  
 
 0.414
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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