STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00078.1Lysine-epsilon oxidase. (627 aa)    
Predicted Functional Partners:
AKJ00079.1
Dehydrogenase flavoprotein LodB.
 
     0.946
AKI99668.1
Dehydrogenase flavoprotein LodB.
 
     0.782
AKI99599.1
Dehydrogenase flavoprotein LodB.
 
     0.781
AKJ00077.1
Small molecule metabolism.
       0.714
AKJ02217.1
Cytoplasmic alpha-amylase.
  
    0.605
AKI99453.1
Hypothetical protein.
 
     0.565
AKJ03769.1
Hypothetical protein.
     0.564
AKJ03535.1
Extracellular protease precursor.
  
     0.531
AKJ04550.1
Rhs-family protein.
  
     0.528
AKJ04752.1
Extracellular protease precursor.
  
     0.525
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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