Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AKJ00116.1Membrane-bound metal-dependent hydrolase. (341 aa)    
Predicted Functional Partners:
AKJ00117.1
Hypothetical protein.
       0.773
AKJ00118.1
Acyl-CoA dehydrogenase.
       0.773
AKJ00119.1
Hypothetical protein.
       0.560
AKJ00120.1
Hypothetical protein.
       0.560
AKJ00121.1
Hypothetical protein.
       0.560
AKJ07698.1
Hypothetical protein.
  
     0.476
AKJ05323.1
Polyhydroxyalkanoic acid synthase.
  
     0.437
AKJ00115.1
Hypothetical protein.
       0.425
AKJ04533.1
Hypothetical protein.
 
    0.408
AKJ02204.1
Hypothetical protein.
  
     0.401
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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