Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00122.1TonB-dependent receptor. (669 aa)    
Predicted Functional Partners:
AKJ00123.1
Hypothetical protein.
       0.773
AKJ08275.1
TonB-dependent receptor.
  
   
 0.615
AKI99009.1
Outer membrane vitamin B12 receptor BtuB.
  
  
 0.611
AKJ02130.1
TonB-dependent receptor.
  
   
 0.578
AKJ07628.1
Outer membrane vitamin B12 receptor BtuB.
 
   
 0.557
AKJ02842.1
Hypothetical protein.
  
 
 0.553
AKJ06265.1
Hypothetical protein.
  
 
 0.553
AKJ07624.1
Vitamin B12 ABC transporter, permease component BtuC; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.550
AKJ00380.1
ABC transporter, permease protein, putative.
  
    0.533
AKJ07614.1
Vitamin B12 ABC transporter, ATPase component BtuD.
 
  
 0.493
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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