Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00133.1Hypothetical protein. (191 aa)    
Predicted Functional Partners:
AKJ00132.1
Period clock protein.
       0.773
AKJ00131.1
Hypothetical protein.
       0.572
AKI99612.1
Hypothetical protein.
   
    0.547
AKI99829.1
2-dehydropantoate 2-reductase.
   
    0.547
AKJ07359.1
2-dehydropantoate 2-reductase.
   
    0.547
AKJ00134.1
Hypothetical protein.
 
     0.546
AKJ01848.1
ADA regulatory protein.
  
  
 0.497
AKJ05395.1
Nickel transporter UreH.
  
     0.459
AKJ02956.1
Phytanoyl-CoA dioxygenase domain containing 1.
  
     0.458
AKJ07062.1
Methyltransferase.
  
     0.436
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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