Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00134.1Hypothetical protein. (132 aa)    
Predicted Functional Partners:
AKJ00837.1
Peptidase, M19 family.
  
     0.672
AKJ01018.1
Peptidase, M19 family.
  
     0.669
AKJ02076.1
Putative immunogloblin.
  
     0.647
AKI99751.1
1,4-dihydroxy-2-naphthoate polyprenyltransferase.
  
     0.635
AKJ03346.1
dTDP-4-dehydrorhamnose reductase; Belongs to the glycosyl hydrolase 1 family.
  
     0.616
AKJ01278.1
Ferric siderophore transport system, periplasmic binding protein TonB.
  
     0.592
AKJ06239.1
Trehalose synthase.
  
     0.556
AKJ07994.1
Trehalose synthase.
  
     0.550
AKJ00133.1
Hypothetical protein.
 
     0.546
AKJ02042.1
RTX toxin.
  
     0.544
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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