STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00155.1Squalene--hopene cyclase. (511 aa)    
Predicted Functional Partners:
AKI98907.1
Phytoene synthase.
  
 
 0.931
AKJ05192.1
Squalene--hopene cyclase.
  
  
 
0.928
AKJ03464.1
Squalene--hopene cyclase.
  
  
 
0.919
AKJ01459.1
Putative integral membrane protein.
  
     0.746
AKJ03564.1
Putative secreted protein.
  
     0.729
AKJ01518.1
Phage lysin, 1,4-beta-N-acetylmuramidase.
  
     0.709
AKI99246.1
Tetratricopeptide repeat protein.
  
     0.695
AKJ00385.1
NHL repeat domain protein.
  
     0.693
AKI99451.1
Apolipoprotein N-acyltransferase.
  
   
 0.683
AKJ00837.1
Peptidase, M19 family.
  
     0.668
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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