STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00164.1D-alanyl-D-alanine carboxypeptidase. (183 aa)    
Predicted Functional Partners:
AKJ01983.1
Multimodular transpeptidase-transglycosylase.
     
  0.900
AKJ06928.1
Multimodular transpeptidase-transglycosylase.
     
  0.900
AKJ00165.1
Hypothetical protein.
       0.509
AKJ00166.1
Putative cytochrome P450 hydroxylase.
       0.509
AKJ00163.1
Heavy metal RND efflux outer membrane protein, CzcC family.
       0.473
deoD
Purine nucleoside phosphorylase.
  
    0.466
AKJ00161.1
RND efflux system, inner membrane transporter CmeB.
       0.451
AKJ00162.1
Putative RND efflux membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.451
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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