STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00190.1Hypothetical protein. (223 aa)    
Predicted Functional Partners:
AKJ00191.1
Hypothetical protein.
      0.828
AKJ00189.1
Abortive infection protein AbiGII.
       0.746
AKJ00188.1
Basic proline-rich protein.
       0.580
AKJ02466.1
Hypothetical protein.
  
  
 0.573
AKJ03709.1
Phosphoesterase protein.
  
  
 0.573
AKJ02992.1
Dihydropteroate synthase.
  
  
 0.556
rph
Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
  
    0.536
AKJ03860.1
Dihydroneopterin aldolase.
  
  
 0.533
nusG
Transcription antitermination protein NusG; Participates in transcription elongation, termination and antitermination.
   
    0.522
AKJ06964.1
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase.
  
  
 0.522
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.