def-2 protein (Archangium gephyra) - STRING interaction network

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def-2

Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. (200 aa)

Predicted Functional Partners:

rplT

0.839

rpsP

0.831

rplD

0.806

rplU

0.788

rplR

0.761

rplI

0.754

rpsT

0.752

rplS

0.751

rpsJ

0.749

rpsU

0.747

Your Current Organism:

Archangium gephyra

NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
def-2	rplD	AA314_01831	AA314_04729	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	LSU ribosomal protein L4p; Forms part of the polypeptide exit tunnel.	0.806
def-2	rplI	AA314_01831	AA314_03768	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	LSU ribosomal protein L9p; Binds to the 23S rRNA.	0.754
def-2	rplR	AA314_01831	AA314_04744	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	LSU ribosomal protein L18p; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.761
def-2	rplS	AA314_01831	AA314_05052	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	LSU ribosomal protein L19p; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.751
def-2	rplT	AA314_01831	AA314_05148	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	LSU ribosomal protein L20p; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.839
def-2	rplU	AA314_01831	AA314_02928	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.788
def-2	rpsJ	AA314_01831	AA314_04728	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	SSU ribosomal protein S10p; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.749
def-2	rpsP	AA314_01831	AA314_05048	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	SSU ribosomal protein S16p; Belongs to the bacterial ribosomal protein bS16 family.	0.831
def-2	rpsT	AA314_01831	AA314_04192	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	SSU ribosomal protein S20p; Binds directly to 16S ribosomal RNA.	0.752
def-2	rpsU	AA314_01831	AA314_03574	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	SSU ribosomal protein S21p; Belongs to the bacterial ribosomal protein bS21 family.	0.747
rplD	def-2	AA314_04729	AA314_01831	LSU ribosomal protein L4p; Forms part of the polypeptide exit tunnel.	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	0.806
rplD	rplI	AA314_04729	AA314_03768	LSU ribosomal protein L4p; Forms part of the polypeptide exit tunnel.	LSU ribosomal protein L9p; Binds to the 23S rRNA.	0.992
rplD	rplR	AA314_04729	AA314_04744	LSU ribosomal protein L4p; Forms part of the polypeptide exit tunnel.	LSU ribosomal protein L18p; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.997
rplD	rplS	AA314_04729	AA314_05052	LSU ribosomal protein L4p; Forms part of the polypeptide exit tunnel.	LSU ribosomal protein L19p; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.995
rplD	rplT	AA314_04729	AA314_05148	LSU ribosomal protein L4p; Forms part of the polypeptide exit tunnel.	LSU ribosomal protein L20p; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.996
rplD	rplU	AA314_04729	AA314_02928	LSU ribosomal protein L4p; Forms part of the polypeptide exit tunnel.	LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.991
rplD	rpsJ	AA314_04729	AA314_04728	LSU ribosomal protein L4p; Forms part of the polypeptide exit tunnel.	SSU ribosomal protein S10p; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.999
rplD	rpsP	AA314_04729	AA314_05048	LSU ribosomal protein L4p; Forms part of the polypeptide exit tunnel.	SSU ribosomal protein S16p; Belongs to the bacterial ribosomal protein bS16 family.	0.992
rplD	rpsT	AA314_04729	AA314_04192	LSU ribosomal protein L4p; Forms part of the polypeptide exit tunnel.	SSU ribosomal protein S20p; Binds directly to 16S ribosomal RNA.	0.979
rplD	rpsU	AA314_04729	AA314_03574	LSU ribosomal protein L4p; Forms part of the polypeptide exit tunnel.	SSU ribosomal protein S21p; Belongs to the bacterial ribosomal protein bS21 family.	0.957

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