STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00240.1Phytoene dehydrogenase. (514 aa)    
Predicted Functional Partners:
AKJ00241.1
Phytoene synthase.
 
 
 0.998
AKJ00244.1
Hydroxyneurosporene synthase.
 
 
 0.994
AKJ00246.1
Geranylgeranyl-diphosphate geranylgeranyl-transferase.
    
 0.979
AKI99540.1
Lycopene cyclase, CruA type.
  
 
 0.920
AKJ08109.1
Phytoene desaturase.
  
  
 
0.915
AKJ00248.1
Acyltransferase domain protein.
 
   
 0.900
AKJ00249.1
Transcriptional regulator, MerR family.
 
  
 0.853
AKJ00243.1
Phytoene desaturase.
 
   
0.834
AKJ00242.1
Hydroxymethylglutaryl-CoA reductase; Belongs to the HMG-CoA reductase family.
     
 0.807
AKJ00239.1
Octaprenyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
 
  
 0.800
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.