STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00246.1Geranylgeranyl-diphosphate geranylgeranyl-transferase. (127 aa)    
Predicted Functional Partners:
AKJ00240.1
Phytoene dehydrogenase.
    
 0.979
AKJ00244.1
Hydroxyneurosporene synthase.
    
  0.976
AKJ08109.1
Phytoene desaturase.
     
 0.903
AKI99540.1
Lycopene cyclase, CruA type.
     
  0.900
AKI99541.1
phi-Carotenoid synthase.
     
  0.900
AKJ07119.1
Beta-carotene ketolase.
     
  0.900
AKJ00241.1
Phytoene synthase.
     
 0.808
AKJ00247.1
Hypothetical protein.
       0.794
AKJ00243.1
Phytoene desaturase.
     
 0.780
AKJ00242.1
Hydroxymethylglutaryl-CoA reductase; Belongs to the HMG-CoA reductase family.
       0.773
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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