Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00263.1CBS domain protein. (229 aa)    
Predicted Functional Partners:
AKJ05114.1
CBS domain protein.
 
   
 0.661
AKJ00172.1
Deacetylase.
 
    0.534
AKJ01070.1
Deacetylase.
 
    0.533
AKJ00264.1
Xaa-Pro aminopeptidase family enzyme.
       0.532
AKJ06918.1
Acetylspermidine deacetylase.
  
    0.471
AKJ00262.1
Major facilitator superfamily MFS_1.
       0.465
AKJ04606.1
CBS domain protein.
  
     0.461
AKJ06519.1
CBS domain protein AcuB.
  
     0.445
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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