Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00292.1Sulfate permease. (548 aa)    
Predicted Functional Partners:
AKJ07707.1
Carbonic anhydrase.
  
 0.942
AKI99019.1
Carbonic anhydrase.
 
  
 0.922
AKJ00291.1
Hypothetical protein; Belongs to the UPF0753 family.
     0.916
AKJ00289.1
NADH-ubiquinone oxidoreductase chain M.
 
 
 0.821
AKJ00290.1
NADH-ubiquinone oxidoreductase chain L.
 
  
 0.800
AKJ03352.1
RND efflux membrane fusion protein.
  
     0.677
AKJ03353.1
HlyB/MsbA family ABC transporter.
  
     0.642
AKJ05086.1
Malonyl CoA-acyl carrier protein transacylase.
 
 
 0.625
AKJ03351.1
Outer membrane component of multidrug efflux pump.
  
     0.615
AKJ00288.1
Hypothetical protein.
       0.551
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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