Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00334.1Hypothetical protein. (348 aa)    
Predicted Functional Partners:
AKJ00332.1
Hypothetical protein.
       0.773
AKJ00333.1
Hypothetical protein.
       0.773
AKJ00335.1
Hypothetical protein.
       0.746
AKJ00954.1
General secretion pathway protein F.
  
  
 0.555
AKJ05719.1
General secretion pathway protein F.
  
  
 0.555
AKJ05726.1
Hypothetical protein.
  
 
 0.555
AKJ06663.1
Type IV fimbrial assembly protein PilC.
  
  
 0.555
AKJ05518.1
DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.537
AKI98819.1
Type IV fimbrial assembly, ATPase PilB.
  
 
 0.486
AKJ00195.1
Type IV fimbrial assembly, ATPase PilB.
  
 
 0.486
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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