Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AKI99850.1 | AKJ00341.1 | AA314_01477 | AA314_01967 | DNA topoisomerase III. | Exonuclease SbcC. | 0.984 |
AKI99850.1 | AKJ00753.1 | AA314_01477 | AA314_02379 | DNA topoisomerase III. | Hypothetical protein. | 0.970 |
AKI99850.1 | AKJ00781.1 | AA314_01477 | AA314_02407 | DNA topoisomerase III. | ATP-dependent DNA helicase RecQ. | 0.796 |
AKI99850.1 | AKJ00934.1 | AA314_01477 | AA314_02560 | DNA topoisomerase III. | Hypothetical protein. | 0.970 |
AKI99850.1 | AKJ07453.1 | AA314_01477 | AA314_09079 | DNA topoisomerase III. | DNA repair exonuclease family protein YhaO. | 0.973 |
AKI99850.1 | AKJ08123.1 | AA314_01477 | AA314_09749 | DNA topoisomerase III. | Hypothetical protein. | 0.974 |
AKI99850.1 | AKJ08234.1 | AA314_01477 | AA314_09860 | DNA topoisomerase III. | Hypothetical protein. | 0.974 |
AKI99850.1 | polA | AA314_01477 | AA314_06530 | DNA topoisomerase III. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.993 |
AKI99850.1 | sbcD | AA314_01477 | AA314_01966 | DNA topoisomerase III. | Exonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.970 |
AKI99850.1 | topA | AA314_01477 | AA314_06665 | DNA topoisomerase III. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.986 |
AKJ00341.1 | AKI99850.1 | AA314_01967 | AA314_01477 | Exonuclease SbcC. | DNA topoisomerase III. | 0.984 |
AKJ00341.1 | AKJ00753.1 | AA314_01967 | AA314_02379 | Exonuclease SbcC. | Hypothetical protein. | 0.738 |
AKJ00341.1 | AKJ00781.1 | AA314_01967 | AA314_02407 | Exonuclease SbcC. | ATP-dependent DNA helicase RecQ. | 0.547 |
AKJ00341.1 | AKJ00934.1 | AA314_01967 | AA314_02560 | Exonuclease SbcC. | Hypothetical protein. | 0.738 |
AKJ00341.1 | AKJ07453.1 | AA314_01967 | AA314_09079 | Exonuclease SbcC. | DNA repair exonuclease family protein YhaO. | 0.738 |
AKJ00341.1 | AKJ08123.1 | AA314_01967 | AA314_09749 | Exonuclease SbcC. | Hypothetical protein. | 0.738 |
AKJ00341.1 | AKJ08234.1 | AA314_01967 | AA314_09860 | Exonuclease SbcC. | Hypothetical protein. | 0.738 |
AKJ00341.1 | polA | AA314_01967 | AA314_06530 | Exonuclease SbcC. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.965 |
AKJ00341.1 | sbcD | AA314_01967 | AA314_01966 | Exonuclease SbcC. | Exonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.997 |
AKJ00341.1 | topA | AA314_01967 | AA314_06665 | Exonuclease SbcC. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.622 |
page 1 of 4