STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00381.1ABC transporter, ATP-binding protein. (243 aa)    
Predicted Functional Partners:
AKJ00380.1
ABC transporter, permease protein, putative.
 
     0.944
AKJ04512.1
Cell division protein FtsX.
     0.931
AKJ04513.1
Cell division protein FtsX.
     0.930
AKJ07314.1
Macrolide export ATP-binding/permease protein MacB.
     0.924
AKJ00382.1
Arylesterase precursor.
 
     0.885
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
   
    0.463
AKJ00787.1
ABC transporter, permease protein.
 
     0.450
AKJ00786.1
Cell division protein FtsX.
 
     0.411
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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