STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00383.1Transcriptional regulator, TetR family. (195 aa)    
Predicted Functional Partners:
AKJ00385.1
NHL repeat domain protein.
 
     0.827
AKJ00384.1
Cyclohexanone monooxygenase.
 
     0.676
AKJ05370.1
Hypothetical protein.
  
     0.583
AKJ00386.1
Short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.539
AKJ00387.1
Hypothetical protein.
       0.525
AKJ02425.1
Hypothetical protein.
  
     0.525
AKI99649.1
Transcriptional regulator, TetR family.
  
     0.508
AKI99350.1
Phosphoesterase protein.
  
     0.474
AKI99524.1
Negative regulator of beta-lactamase expression.
  
     0.466
AKJ03540.1
Hydroxymethylpyrimidine ABC transporter, substrate-binding component.
  
     0.446
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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