STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00400.1Programmed cell death toxin YdcE; Toxic component of a type II toxin-antitoxin (TA) system. (131 aa)    
Predicted Functional Partners:
AKJ04256.1
Hypothetical protein.
  
     0.527
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
  
    0.522
AKI98859.1
Redox-sensing transcriptional regulator QorR.
   
    0.522
AKJ03799.1
Transcriptional regulator, HxlR family.
   
    0.522
AKJ06193.1
Transcriptional regulator, HxlR family.
   
    0.522
AKI99353.1
Hypothetical protein.
  
     0.487
AKJ00401.1
Putative lipoprotein.
       0.462
AKJ06908.1
Hypothetical protein.
  
     0.422
AKJ07058.1
Hypothetical protein.
  
     0.419
AKJ06461.1
Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase.
  
     0.406
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.