STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00404.1DNA-binding response regulator, AraC family. (106 aa)    
Predicted Functional Partners:
AKJ08284.1
Sensory box histidine kinase.
 
 
 0.851
AKJ00612.1
Diguanylate cyclase/phosphodiesterase.
 
 
 0.849
AKI99519.1
Sensory box histidine kinase.
 
 
 0.847
AKJ00442.1
Tetratricopeptide repeat family.
 
 
 0.847
AKJ08110.1
Histidine protein kinase AsgD.
 
 
 
 0.839
AKJ00885.1
Diguanylate cyclase/phosphodiesterase.
 
 
 0.838
AKJ03645.1
Two-component sensor histidine kinase.
 
 
 
 0.834
AKJ01383.1
Chemotaxis protein methyltransferase CheR.
 
 
 0.833
AKJ01397.1
Sensory box histidine kinase.
 
 
 0.830
AKJ04443.1
Sensory box histidine kinase/response regulator.
 
 
 0.828
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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