Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00410.1Hypothetical protein. (249 aa)    
Predicted Functional Partners:
AKJ03911.1
NHL repeat containing protein.
  
     0.629
AKI99034.1
Fatty acid desaturase family protein.
  
     0.522
AKJ00411.1
Lead, cadmium, zinc and mercury transporting ATPase.
       0.499
AKJ00498.1
Glycosyltransferase.
  
     0.499
AKJ07487.1
Hypothetical protein.
  
     0.494
AKI99038.1
Fatty acid desaturase family protein.
  
     0.490
AKI99030.1
Hypothetical protein.
  
     0.434
AKJ03743.1
LysM domain protein.
  
     0.406
AKI98965.1
Tryptophan synthase alpha chain.
  
     0.404
AKJ00413.1
Putative phosphohydrolase.
 
     0.402
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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