STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00419.1Transcriptional regulator, AraC family. (322 aa)    
Predicted Functional Partners:
AKJ00418.1
Hypothetical protein.
 
     0.789
AKJ00607.1
Transcriptional regulator, AraC family.
 
 
 0.746
AKI99959.1
Transcriptional regulator, AraC family.
 
 
 0.682
AKJ06334.1
Transcriptional regulator, AraC family.
 
 
 0.642
AKI98432.1
ThiJ/PfpI family protein.
  
     0.486
AKJ08357.1
Transcriptional regulator, AraC family.
 
 
 0.482
AKJ01169.1
Dihydrofolate reductase.
 
    0.478
AKJ02367.1
Transcriptional regulator, AraC family.
  
     0.472
AKI99277.1
Hypothetical protein.
  
    0.471
AKJ05178.1
Transcriptional regulator, AraC family.
 
 
 0.424
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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