Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AKJ00419.1Transcriptional regulator, AraC family. (322 aa)    
Predicted Functional Partners:
AKJ00418.1
Hypothetical protein.
 
     0.787
AKJ00607.1
Transcriptional regulator, AraC family.
 
 
 0.746
AKI99959.1
Transcriptional regulator, AraC family.
 
 
 0.683
AKJ06334.1
Transcriptional regulator, AraC family.
 
 
 0.643
AKI98432.1
ThiJ/PfpI family protein.
  
     0.486
AKJ08357.1
Transcriptional regulator, AraC family.
 
 
 0.483
AKJ02367.1
Transcriptional regulator, AraC family.
  
     0.472
AKI99277.1
Hypothetical protein.
  
     0.462
AKJ05178.1
Transcriptional regulator, AraC family.
 
 
 0.425
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.423
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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