STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00427.1Ferredoxin, 2Fe-2S. (113 aa)    
Predicted Functional Partners:
AKJ00426.1
Glyoxalase family protein.
 
   
 0.931
AKJ00425.1
Hypothetical protein.
 
    0.908
AKJ00428.1
Salicylate hydroxylase.
 
   
 0.830
AKJ00424.1
Nodulation protein D; Belongs to the LysR transcriptional regulatory family.
 
     0.637
AKJ00422.1
Metal-dependent hydrolase.
 
     0.620
AKJ04831.1
Uroporphyrinogen-III methyltransferase; Belongs to the precorrin methyltransferase family.
  
  
 0.536
AKJ01770.1
Respiratory nitrate reductase gamma chain.
  
  
 0.493
AKJ00429.1
Putative ATP-dependent DNA helicase.
       0.490
AKJ00546.1
RebB protein.
  
     0.489
AKJ00545.1
RebB protein.
  
     0.487
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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