STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00439.1Bacteriophytochrome heme oxygenase BphO. (217 aa)    
Predicted Functional Partners:
AKJ00440.1
Phytochrome, two-component sensor histidine kinase.
 
     0.939
hemH
Ferrochelatase, protoheme ferro-lyase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
     
 0.901
AKI99917.1
Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA.
     
  0.900
AKJ01520.1
Heme oxygenase.
     
  0.900
ctaB
Heme O synthase, protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
     
  0.900
AKJ01381.1
Phytochrome, two-component sensor histidine kinase.
 
   
 0.803
AKJ00442.1
Tetratricopeptide repeat family.
     
 0.777
AKJ00441.1
Two-component system response regulator.
       0.773
AKJ04680.1
Hypothetical protein.
  
     0.481
AKJ00438.1
Extracellular serine protease; Belongs to the peptidase S8 family.
       0.468
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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