STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00464.1Tat. (458 aa)    
Predicted Functional Partners:
AKJ00466.1
RTX toxin.
 
     0.901
AKJ00465.1
Hypothetical protein.
       0.782
AKJ00461.1
Hypothetical protein.
       0.732
AKJ00463.1
Putative lipoprotein.
       0.730
AKJ02914.1
Hypothetical protein.
  
     0.722
AKJ00234.1
Metal dependent amidohydrolase.
  
     0.720
AKJ07495.1
Hypothetical protein.
  
     0.717
AKJ05985.1
Tat.
  
     0.712
AKI98900.1
Hypothetical protein.
  
     0.710
AKJ04179.1
Metal dependent amidohydrolase.
  
     0.704
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.