Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00466.1RTX toxin. (1236 aa)    
Predicted Functional Partners:
AKJ00464.1
Tat.
 
     0.901
AKJ01255.1
TolA protein.
 
 
   0.787
AKJ02161.1
Plectin 1 isoform 8.
  
 
   0.782
AKJ07382.1
Exonuclease SbcC.
  
   0.780
AKJ06212.1
Hypothetical protein.
  
 
   0.777
AKJ01243.1
Hypothetical protein.
  
     0.775
AKJ02914.1
Hypothetical protein.
  
     0.775
AKJ02846.1
Flagellar motor protein.
  
     0.774
AKJ05146.1
DNA gyrase subunit B.
  
 
   0.774
AKJ00186.1
Alpha-2-macroglobulin domain protein.
  
     0.773
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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