Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKJ00527.1Hypothetical protein. (316 aa)    
Predicted Functional Partners:
AKJ00528.1
Lipopolysaccharide ABC transporter, ATP-binding protein LptB.
  
  
 0.973
AKJ00525.1
Lipid A biosynthesis lauroyl acyltransferase.
     
 0.814
AKJ00526.1
Hypothetical protein.
       0.780
AKJ03666.1
Outer membrane protein Imp, required for envelope biogenesis / Organic solvent tolerance protein precursor.
  
 
 0.762
AKJ00529.1
RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.626
astB
Succinylarginine dihydrolase; Catalyzes the hydrolysis of N(2)-succinylarginine into N(2)- succinylornithine, ammonia and CO(2).
       0.543
AKJ05847.1
tolB protein precursor protein.
  
  
 0.510
AKJ05823.1
Flagellar motor switch protein FliM.
    
   0.464
AKJ06524.1
TPR domain protein.
   
    0.459
AKJ06945.1
Arabinose 5-phosphate isomerase; Belongs to the SIS family. GutQ/KpsF subfamily.
  
  
 0.437
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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