STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00537.1TPR repeat protein. (805 aa)    
Predicted Functional Partners:
AKJ02287.1
Tetratricopeptide repeat protein.
  
     0.764
AKJ01833.1
TPR repeat-containing protein.
  
     0.760
AKJ01099.1
Kinesin light chain.
  
     0.744
AKJ01749.1
TPR repeat protein.
  
     0.726
AKJ01185.1
DNA recombination protein RmuC.
  
     0.725
AKJ01005.1
DNA recombination protein RmuC.
  
     0.724
AKJ06146.1
Hypothetical protein.
  
     0.714
AKJ05112.1
High-affnity carbon uptake protein Hat/HatR.
  
     0.696
AKJ06241.1
High-affnity carbon uptake protein Hat/HatR.
  
     0.688
AKJ01798.1
High-affnity carbon uptake protein Hat/HatR.
  
     0.687
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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