Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00550.1Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family. (359 aa)    
Predicted Functional Partners:
AKJ00551.1
Hypothetical protein.
 
 
   0.627
AKJ01472.1
Hypothetical protein.
  
     0.601
AKJ03336.1
Alginate lyase precursor.
  
     0.529
AKJ00552.1
Hypothetical protein.
       0.519
AKJ05908.1
Basic proline-rich protein precursor.
  
 
   0.489
AKJ00549.1
RebB protein.
       0.484
AKI98877.1
Rhs-family protein.
  
 
   0.481
AKJ02804.1
Rhs-family protein.
  
 
   0.464
AKJ02001.1
Putative Bacterial Ig-like domain protein.
  
 
   0.459
AKJ01693.1
Lanthionine biosynthesis protein LanM.
  
     0.449
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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