STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00550.1Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family. (359 aa)    
Predicted Functional Partners:
AKJ00551.1
Hypothetical protein.
 
 
   0.638
AKJ01472.1
Hypothetical protein.
  
     0.601
AKJ03336.1
Alginate lyase precursor.
  
     0.529
AKJ05908.1
Basic proline-rich protein precursor.
  
 
   0.522
AKJ00552.1
Hypothetical protein.
       0.519
AKI98877.1
Rhs-family protein.
  
   0.496
AKJ00549.1
RebB protein.
       0.484
AKJ02804.1
Rhs-family protein.
  
   0.480
AKJ01693.1
Lanthionine biosynthesis protein LanM.
  
     0.449
AKJ04869.1
Putative signal peptide protein.
  
     0.445
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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