Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKJ00556.1Hypothetical protein. (298 aa)    
Predicted Functional Partners:
AKJ01345.1
Retinol dehydrogenase 13; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.733
AKJ01428.1
Long-chain-fatty-acid CoA ligase.
  
 
 0.643
AKJ02424.1
Malonyl CoA-acyl carrier protein transacylase.
  
 
 0.606
AKJ02806.1
Malonyl CoA-acyl carrier protein transacylase.
  
 
 0.606
AKJ02809.1
Malonyl CoA-acyl carrier protein transacylase.
  
 
 0.606
AKJ05086.1
Malonyl CoA-acyl carrier protein transacylase.
 
 
 0.499
AKJ03529.1
Malonyl CoA-acyl carrier protein transacylase.
  
 
 0.494
AKJ03360.1
Malonyl CoA-acyl carrier protein transacylase.
  
 
 0.482
AKJ00054.1
Long-chain-fatty-acid--CoA ligase.
  
 
 0.457
AKJ04231.1
Non-ribosomal peptide synthase.
  
 
 0.457
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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