AKJ00556.1 protein (Archangium gephyra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AKJ00556.1

Hypothetical protein. (298 aa)

Predicted Functional Partners:

AKJ01345.1

0.733

AKJ02424.1

0.593

AKJ02806.1

0.593

AKJ02809.1

0.593

AKI98831.1

0.474

AKJ05398.1

0.467

AKJ05086.1

0.463

AKJ02077.1

0.450

AKJ02517.1

0.428

AKJ01068.1

0.423

Your Current Organism:

Archangium gephyra

NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKI98831.1	AKJ00556.1	AA314_00458	AA314_02182	Flavin reductase.	Hypothetical protein.	0.474
AKI98831.1	AKJ05086.1	AA314_00458	AA314_06712	Flavin reductase.	Malonyl CoA-acyl carrier protein transacylase.	0.472
AKJ00556.1	AKI98831.1	AA314_02182	AA314_00458	Hypothetical protein.	Flavin reductase.	0.474
AKJ00556.1	AKJ01068.1	AA314_02182	AA314_02694	Hypothetical protein.	Choline-sulfatase.	0.423
AKJ00556.1	AKJ01345.1	AA314_02182	AA314_02971	Hypothetical protein.	Retinol dehydrogenase 13; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.733
AKJ00556.1	AKJ02077.1	AA314_02182	AA314_03703	Hypothetical protein.	Oxidoreductase, short chain dehydrogenase/reductase family.	0.450
AKJ00556.1	AKJ02424.1	AA314_02182	AA314_04050	Hypothetical protein.	Malonyl CoA-acyl carrier protein transacylase.	0.593
AKJ00556.1	AKJ02517.1	AA314_02182	AA314_04143	Hypothetical protein.	Malonyl CoA-acyl carrier protein transacylase.	0.428
AKJ00556.1	AKJ02806.1	AA314_02182	AA314_04432	Hypothetical protein.	Malonyl CoA-acyl carrier protein transacylase.	0.593
AKJ00556.1	AKJ02809.1	AA314_02182	AA314_04435	Hypothetical protein.	Malonyl CoA-acyl carrier protein transacylase.	0.593
AKJ00556.1	AKJ05086.1	AA314_02182	AA314_06712	Hypothetical protein.	Malonyl CoA-acyl carrier protein transacylase.	0.463
AKJ00556.1	AKJ05398.1	AA314_02182	AA314_07024	Hypothetical protein.	1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.	0.467
AKJ01068.1	AKJ00556.1	AA314_02694	AA314_02182	Choline-sulfatase.	Hypothetical protein.	0.423
AKJ01068.1	AKJ01345.1	AA314_02694	AA314_02971	Choline-sulfatase.	Retinol dehydrogenase 13; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.423
AKJ01068.1	AKJ05086.1	AA314_02694	AA314_06712	Choline-sulfatase.	Malonyl CoA-acyl carrier protein transacylase.	0.578
AKJ01068.1	AKJ05398.1	AA314_02694	AA314_07024	Choline-sulfatase.	1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.	0.404
AKJ01345.1	AKJ00556.1	AA314_02971	AA314_02182	Retinol dehydrogenase 13; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Hypothetical protein.	0.733
AKJ01345.1	AKJ01068.1	AA314_02971	AA314_02694	Retinol dehydrogenase 13; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Choline-sulfatase.	0.423
AKJ01345.1	AKJ02424.1	AA314_02971	AA314_04050	Retinol dehydrogenase 13; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Malonyl CoA-acyl carrier protein transacylase.	0.593
AKJ01345.1	AKJ02517.1	AA314_02971	AA314_04143	Retinol dehydrogenase 13; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Malonyl CoA-acyl carrier protein transacylase.	0.428