Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00586.1AknN. (733 aa)    
Predicted Functional Partners:
AKJ00585.1
BarH.
 
     0.841
AKI98888.1
Nitroreductase family protein.
  
  
 0.622
AKJ04966.1
Lanthionine biosynthesis protein LanB.
  
  
 0.622
AKJ05788.1
Hypothetical protein.
 
  
 0.622
AKJ05880.1
Hypothetical protein.
 
  
 0.571
AKI98422.1
Putative metal-dependent membrane protease.
  
  
 0.552
AKI99634.1
CAAX amino terminal protease family protein.
  
  
 0.552
AKJ03085.1
CAAX amino terminal protease family protein.
  
  
 0.552
AKJ05260.1
CAAX amino terminal protease family protein.
  
  
 0.552
AKJ06896.1
Abortive infection protein.
  
  
 0.552
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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