STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00601.1Peptidase C14 caspase catalytic subunit p20. (522 aa)    
Predicted Functional Partners:
AKJ00599.1
RNA polymerase sigma-70 factor, group 3; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.780
AKJ00598.1
Hypothetical protein.
       0.768
AKJ00600.1
Hypothetical protein.
       0.768
AKJ04698.1
RNA polymerase sigma-70 factor, group 3; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.751
AKI99770.1
Hypothetical protein.
 
     0.720
AKJ06332.1
TonB family protein.
 
     0.672
AKJ08151.1
TonB family protein.
  
     0.625
AKJ04299.1
TPR domain protein, putative component of TonB system.
  
    0.602
AKJ08337.1
OmpA domain protein.
  
 
   0.590
AKJ00597.1
Hypothetical protein.
       0.588
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.