Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AKJ00607.1Transcriptional regulator, AraC family. (335 aa)    
Predicted Functional Partners:
AKJ00419.1
Transcriptional regulator, AraC family.
 
 
 0.746
AKJ05362.1
Transcriptional regulator, AraC family.
  
     0.684
AKJ05015.1
Transcriptional regulator, AraC family.
  
     0.675
AKI98442.1
Transcriptional regulator, AraC family protein.
  
     0.612
AKJ06334.1
Transcriptional regulator, AraC family.
  
     0.569
AKJ03603.1
Transcriptional regulator, AraC family protein.
  
     0.542
AKJ00606.1
Hypothetical protein.
       0.523
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.417
AKJ02366.1
Transcriptional regulator.
 
 
 0.415
AKJ05178.1
Transcriptional regulator, AraC family.
  
     0.409
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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