Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00625.1Hypothetical protein. (762 aa)    
Predicted Functional Partners:
AKI98981.1
Branched-chain amino acid ABC transporter, amino acid-binding protein.
  
     0.754
AKI98734.1
Hypothetical protein.
  
     0.655
AKJ00626.1
Cell surface protein.
 
    
0.578
AKJ00624.1
Cell surface protein.
 
    
0.538
AKI99022.1
Cell surface protein.
  
     0.494
AKJ04463.1
Cell surface protein.
  
 
   0.476
AKJ04455.1
Hypothetical protein.
  
     0.473
AKJ00818.1
Kinesin light chain-like protein.
  
 
   0.417
AKJ07189.1
Methyltransferase, FkbM family domain protein.
  
     0.400
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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