Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKJ00645.1Chemotaxis regulator. (224 aa)    
Predicted Functional Partners:
AKJ08182.1
Chemotaxis protein methyltransferase CheR.
 
 
 0.927
AKJ04546.1
Phytochrome, two-component sensor histidine kinase.
 
 
 0.919
AKI99696.1
Two-component regulator.
 
 
 0.911
AKJ00035.1
Hypothetical protein.
 
 
0.879
AKJ06723.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
 
 0.871
AKJ08133.1
Putative two-component system response regulator.
 
   0.870
AKI99266.1
Putative SigmaB asociated two-component system sensor protein.
 
 
 0.867
AKJ02703.1
Adenylate cyclase.
 
 
0.855
AKJ02163.1
Response regulator/GGDEF/GAF domain protein.
 
   0.841
AKJ02840.1
Two-component hybrid sensor and regulator.
 
 
0.825
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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