Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00660.1Response regulator. (123 aa)    
Predicted Functional Partners:
AKJ02455.1
Response regulator.
  
 
   0.779
AKJ07085.1
Chemotaxis regulator.
  
 
   0.770
AKJ07066.1
Chemotaxis regulator.
  
 
   0.768
AKI99723.1
Chemotaxis regulator.
  
 
   0.763
AKI99724.1
Chemotaxis regulator.
  
   0.763
AKJ05442.1
Serine phosphatase RsbU, regulator of sigma subunit.
  
     0.759
AKJ06898.1
Sensor histidine kinase.
  
    0.756
AKI99288.1
Two-component response regulator.
  
 
   0.752
AKJ00404.1
DNA-binding response regulator, AraC family.
  
    0.752
AKJ07116.1
Chemotaxis regulator.
  
   0.744
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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