STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00690.1Hypothetical protein. (171 aa)    
Predicted Functional Partners:
AKI99850.1
DNA topoisomerase III.
  
 
 0.921
AKI99283.1
DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
 
 0.828
AKJ05524.1
ATP-dependent nuclease, subunit A.
 
 
 0.803
AKJ00104.1
ATP-dependent DNA helicase UvrD/PcrA.
  
 
 0.755
AKJ07382.1
Exonuclease SbcC.
 
     0.711
AKJ02846.1
Flagellar motor protein.
  
     0.681
AKJ02914.1
Hypothetical protein.
  
   
 0.667
AKJ05765.1
Hypothetical protein.
  
     0.647
AKJ01243.1
Hypothetical protein.
  
     0.635
AKJ06884.1
TPR domain protein.
 
 
 0.625
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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