AKJ00711.1 protein (Archangium gephyra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AKJ00711.1

Arginine N-methyltransferase 1. (330 aa)

Predicted Functional Partners:

AKJ05538.1

0.625

AKJ01255.1

0.616

rplK

0.604

AKJ02600.1

0.577

AKJ04896.1

0.575

AKJ03671.1

0.573

AKI99432.1

0.556

AKJ00687.1

0.546

AKJ00734.1

0.536

AKJ01752.1

0.536

Your Current Organism:

Archangium gephyra

NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKI99432.1	AKJ00711.1	AA314_01059	AA314_02337	Hypothetical protein.	Arginine N-methyltransferase 1.	0.556
AKI99432.1	AKJ01255.1	AA314_01059	AA314_02881	Hypothetical protein.	TolA protein.	0.491
AKI99432.1	AKJ02600.1	AA314_01059	AA314_04226	Hypothetical protein.	Cell division protein FtsK.	0.571
AKJ00687.1	AKJ00711.1	AA314_02313	AA314_02337	Cell division protein FtsK.	Arginine N-methyltransferase 1.	0.546
AKJ00687.1	AKJ01255.1	AA314_02313	AA314_02881	Cell division protein FtsK.	TolA protein.	0.712
AKJ00687.1	AKJ05538.1	AA314_02313	AA314_07164	Cell division protein FtsK.	RNA lariat debranching enzyme.	0.433
AKJ00711.1	AKI99432.1	AA314_02337	AA314_01059	Arginine N-methyltransferase 1.	Hypothetical protein.	0.556
AKJ00711.1	AKJ00687.1	AA314_02337	AA314_02313	Arginine N-methyltransferase 1.	Cell division protein FtsK.	0.546
AKJ00711.1	AKJ00734.1	AA314_02337	AA314_02360	Arginine N-methyltransferase 1.	Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.	0.536
AKJ00711.1	AKJ01255.1	AA314_02337	AA314_02881	Arginine N-methyltransferase 1.	TolA protein.	0.616
AKJ00711.1	AKJ01752.1	AA314_02337	AA314_03378	Arginine N-methyltransferase 1.	Hypothetical protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.	0.536
AKJ00711.1	AKJ02600.1	AA314_02337	AA314_04226	Arginine N-methyltransferase 1.	Cell division protein FtsK.	0.577
AKJ00711.1	AKJ03671.1	AA314_02337	AA314_05297	Arginine N-methyltransferase 1.	Hypothetical protein.	0.573
AKJ00711.1	AKJ04896.1	AA314_02337	AA314_06522	Arginine N-methyltransferase 1.	Hypothetical protein.	0.575
AKJ00711.1	AKJ05538.1	AA314_02337	AA314_07164	Arginine N-methyltransferase 1.	RNA lariat debranching enzyme.	0.625
AKJ00711.1	rplK	AA314_02337	AA314_06554	Arginine N-methyltransferase 1.	LSU ribosomal protein L11p; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.604
AKJ00734.1	AKJ00711.1	AA314_02360	AA314_02337	Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.	Arginine N-methyltransferase 1.	0.536
AKJ00734.1	AKJ01255.1	AA314_02360	AA314_02881	Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.	TolA protein.	0.425
AKJ01255.1	AKI99432.1	AA314_02881	AA314_01059	TolA protein.	Hypothetical protein.	0.491
AKJ01255.1	AKJ00687.1	AA314_02881	AA314_02313	TolA protein.	Cell division protein FtsK.	0.712