STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00732.1Chlorosome protein H. (384 aa)    
Predicted Functional Partners:
AKJ00731.1
FrgA.
 
     0.731
AKJ01638.1
Hypothetical protein.
  
  
 0.729
AKJ03206.1
Hypothetical protein.
  
  
 0.729
AKJ04860.1
Hypothetical protein.
  
  
 0.729
AKJ06751.1
Hypothetical protein.
  
  
 0.729
AKJ08261.1
BNR repeat domain protein.
  
     0.635
AKJ01823.1
Hypothetical protein.
  
     0.604
AKJ00466.1
RTX toxin.
  
     0.543
AKJ04380.1
Hypothetical protein.
  
     0.541
AKI98444.1
Hypothetical protein.
  
     0.519
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.