Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00742.1Hypothetical protein. (188 aa)    
Predicted Functional Partners:
AKJ00743.1
Hypothetical protein.
  
  
 0.921
AKJ00745.1
Type IV fimbrial biogenesis protein PilY1.
  
  
 0.873
AKJ00741.1
Hypothetical protein.
  
  
 0.867
AKJ06657.1
Type IV pilin PilA.
  
  
 0.764
AKJ00744.1
Hypothetical protein.
       0.752
AKJ01713.1
Hypothetical protein.
  
  
 0.669
AKJ07740.1
Hypothetical protein.
  
  
 0.669
AKJ00611.1
Type IV fimbrial biogenesis protein PilY1.
  
  
 0.532
AKJ01715.1
Type IV fimbrial biogenesis protein PilY1.
  
  
 0.532
AKJ02029.1
Putative lipoprotein.
  
  
 0.532
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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