Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00760.1Hypothetical protein. (603 aa)    
Predicted Functional Partners:
AKJ06581.1
Metal-dependent hydrolase.
  
     0.681
AKJ00330.1
Hypothetical protein.
  
     0.572
AKJ00774.1
Hypothetical protein.
  
     0.554
AKJ00758.1
Transcriptional regulator, TetR family.
       0.553
AKJ00759.1
Cytochrome P450.
       0.553
AKJ06614.1
Hypothetical protein.
  
     0.541
AKJ00464.1
Tat.
  
     0.518
AKJ00761.1
Universal stress protein UspA.
       0.517
AKJ03146.1
Hypothetical protein.
  
     0.514
AKJ04380.1
Hypothetical protein.
  
     0.511
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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