Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00788.1Outer membrane lipoprotein-sorting protein. (241 aa)    
Predicted Functional Partners:
AKJ00787.1
ABC transporter, permease protein.
 
 
 
 0.919
AKJ00786.1
Cell division protein FtsX.
 
 
 
 0.907
AKJ00790.1
ABC transporter, ATP-binding protein.
 
 
 
 0.716
AKJ01540.1
Cell division protein FtsX.
 
 
 
 0.668
AKJ05841.1
Hypothetical protein.
  
     0.664
AKJ01324.1
Membrane protein.
 
   
 0.655
AKJ00785.1
Transcriptional regulator, TetR family.
       0.645
AKJ00789.1
Hypothetical protein.
       0.598
AKJ05839.1
Cell division protein FtsX.
 
 
 
 0.597
AKJ05838.1
ABC transporter, ATP-binding protein.
 
 
 
 0.575
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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