STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00790.1ABC transporter, ATP-binding protein. (242 aa)    
Predicted Functional Partners:
AKJ04512.1
Cell division protein FtsX.
 
 0.984
AKJ04513.1
Cell division protein FtsX.
 
 0.984
AKJ07314.1
Macrolide export ATP-binding/permease protein MacB.
 
 0.984
AKJ00786.1
Cell division protein FtsX.
 
 
 0.930
AKJ00787.1
ABC transporter, permease protein.
 
 
 0.930
AKJ05840.1
Hypothetical protein.
 
 
 0.866
AKJ01541.1
Hypothetical protein.
 
 
 0.831
AKJ00789.1
Hypothetical protein.
       0.750
AKJ00788.1
Outer membrane lipoprotein-sorting protein.
 
 
 
 0.716
AKJ07898.1
ABC transporter, permease protein.
 
 
 0.701
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.