STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00794.1Response regulator of zinc sigma-54-dependent two-component system. (445 aa)    
Predicted Functional Partners:
AKJ00793.1
Phytochrome, two-component sensor histidine kinase.
  
   0.787
AKJ00792.1
Hypothetical protein.
       0.773
AKJ00529.1
RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.749
AKJ05823.1
Flagellar motor switch protein FliM.
  
  
 0.723
AKJ04336.1
Flagellar sensor histidine kinase FleS.
 
 
 0.477
AKJ03303.1
Sensory box histidine kinase/response regulator.
 
 
 0.475
AKJ04331.1
Flagellar synthesis regulator FleN.
  
 
 0.441
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.