AKJ00823.1 protein (Archangium gephyra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AKJ00823.1

Putative cytochrome P450 hydroxylase. (415 aa)

Predicted Functional Partners:

AKJ02424.1

0.889

AKJ02806.1

0.889

AKJ02809.1

0.889

AKJ00822.1

0.757

AKJ08462.1

0.725

AKJ08370.1

0.709

AKJ00821.1

0.661

AKJ03615.1

0.641

AKJ00824.1

0.608

AKJ01545.1

0.602

Your Current Organism:

Archangium gephyra

NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKJ00821.1	AKJ00822.1	AA314_02447	AA314_02448	Ferredoxin reductase.	Ferredoxin, 2Fe-2S.	0.992
AKJ00821.1	AKJ00823.1	AA314_02447	AA314_02449	Ferredoxin reductase.	Putative cytochrome P450 hydroxylase.	0.661
AKJ00821.1	AKJ00824.1	AA314_02447	AA314_02450	Ferredoxin reductase.	Membrane component of multidrug resistance system; Belongs to the major facilitator superfamily.	0.432
AKJ00822.1	AKJ00821.1	AA314_02448	AA314_02447	Ferredoxin, 2Fe-2S.	Ferredoxin reductase.	0.992
AKJ00822.1	AKJ00823.1	AA314_02448	AA314_02449	Ferredoxin, 2Fe-2S.	Putative cytochrome P450 hydroxylase.	0.757
AKJ00822.1	AKJ00824.1	AA314_02448	AA314_02450	Ferredoxin, 2Fe-2S.	Membrane component of multidrug resistance system; Belongs to the major facilitator superfamily.	0.492
AKJ00822.1	AKJ01545.1	AA314_02448	AA314_03171	Ferredoxin, 2Fe-2S.	Malonyl CoA-acyl carrier protein transacylase.	0.442
AKJ00822.1	AKJ02424.1	AA314_02448	AA314_04050	Ferredoxin, 2Fe-2S.	Malonyl CoA-acyl carrier protein transacylase.	0.547
AKJ00822.1	AKJ02806.1	AA314_02448	AA314_04432	Ferredoxin, 2Fe-2S.	Malonyl CoA-acyl carrier protein transacylase.	0.547
AKJ00822.1	AKJ02809.1	AA314_02448	AA314_04435	Ferredoxin, 2Fe-2S.	Malonyl CoA-acyl carrier protein transacylase.	0.547
AKJ00823.1	AKJ00821.1	AA314_02449	AA314_02447	Putative cytochrome P450 hydroxylase.	Ferredoxin reductase.	0.661
AKJ00823.1	AKJ00822.1	AA314_02449	AA314_02448	Putative cytochrome P450 hydroxylase.	Ferredoxin, 2Fe-2S.	0.757
AKJ00823.1	AKJ00824.1	AA314_02449	AA314_02450	Putative cytochrome P450 hydroxylase.	Membrane component of multidrug resistance system; Belongs to the major facilitator superfamily.	0.608
AKJ00823.1	AKJ01545.1	AA314_02449	AA314_03171	Putative cytochrome P450 hydroxylase.	Malonyl CoA-acyl carrier protein transacylase.	0.602
AKJ00823.1	AKJ02424.1	AA314_02449	AA314_04050	Putative cytochrome P450 hydroxylase.	Malonyl CoA-acyl carrier protein transacylase.	0.889
AKJ00823.1	AKJ02806.1	AA314_02449	AA314_04432	Putative cytochrome P450 hydroxylase.	Malonyl CoA-acyl carrier protein transacylase.	0.889
AKJ00823.1	AKJ02809.1	AA314_02449	AA314_04435	Putative cytochrome P450 hydroxylase.	Malonyl CoA-acyl carrier protein transacylase.	0.889
AKJ00823.1	AKJ03615.1	AA314_02449	AA314_05241	Putative cytochrome P450 hydroxylase.	Malonyl CoA-acyl carrier protein transacylase.	0.641
AKJ00823.1	AKJ08370.1	AA314_02449	AA314_09996	Putative cytochrome P450 hydroxylase.	Flavodoxin reductase.	0.709
AKJ00823.1	AKJ08462.1	AA314_02449	AA314_10088	Putative cytochrome P450 hydroxylase.	Putative cytochrome P450 hydroxylase.	0.725