STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00851.1Response regulator of zinc sigma-54-dependent two-component system. (468 aa)    
Predicted Functional Partners:
AKJ00856.1
Nitrogen regulation protein ntrY.
 
 0.942
AKJ01980.1
Nitrogen regulation protein ntrY.
 0.931
AKJ05166.1
Two-component sensor PilS.
 
 0.924
AKJ02000.1
Nitrogen regulation protein NtrX.
  
  
 
0.909
AKJ05823.1
Flagellar motor switch protein FliM.
  
  
 0.723
AKJ00529.1
RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.707
AKJ08495.1
Response regulator of zinc sigma-54-dependent two-component system.
  
     0.579
AKJ00852.1
Hypothetical protein.
       0.531
AKI99786.1
Chemotaxis protein methyltransferase CheR.
  
 
 0.523
AKJ00795.1
Response regulator of zinc sigma-54-dependent two-component system.
  
     0.503
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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