Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00888.1Hypothetical protein. (237 aa)    
Predicted Functional Partners:
AKJ00889.1
Hypothetical protein.
      0.967
AKJ00919.1
Sensory box histidine kinase.
  
     0.772
AKJ00613.1
Sensory box histidine kinase.
  
     0.767
AKJ06717.1
Sensory box/GGDEF family protein.
  
     0.761
AKJ05000.1
Two-component sensor.
  
     0.760
AKJ05090.1
Response regulator.
  
     0.760
AKI99221.1
Sensory box histidine kinase.
  
     0.758
AKJ05565.1
Sensory box histidine kinase.
  
     0.756
AKJ02691.1
Serine phosphatase RsbU, regulator of sigma subunit.
  
     0.755
AKJ06433.1
DNA-binding response regulator.
  
     0.755
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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