Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00889.1Hypothetical protein. (260 aa)    
Predicted Functional Partners:
AKJ00888.1
Hypothetical protein.
      0.967
AKJ02600.1
Cell division protein FtsK.
 
 
   0.742
AKJ04524.1
Hypothetical protein.
  
     0.741
AKJ00731.1
FrgA.
  
     0.737
AKJ02410.1
TPR domain protein, putative component of TonB system.
 
     0.734
AKJ07382.1
Exonuclease SbcC.
 
     0.722
AKJ07642.1
Hypothetical protein.
  
     0.713
AKJ01820.1
Hypothetical protein.
  
     0.709
AKI99203.1
Putative asmA protein precursor.
  
     0.702
AKJ02161.1
Plectin 1 isoform 8.
  
     0.695
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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