Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
AKJ00897.1Aspartate aminotransferase. (390 aa)    
Predicted Functional Partners:
AKJ00160.1
Aspartate aminotransferase.
  
  
 
0.925
AKI99331.1
Serine--glyoxylate aminotransferase.
  
 0.921
ldh
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
  
 0.837
AKI99084.1
NAD-dependent malic enzyme.
  
 0.832
AKJ03385.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
 0.824
AKJ07211.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
 0.824
AKI98672.1
Branched-chain amino acid aminotransferase.
  
 
 0.823
AKI99249.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
    
 0.822
AKJ05459.1
Pyruvate dehydrogenase E1 component beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
    
 0.820
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
    
 0.819
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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