STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00922.1Geranylgeranyl reductase. (398 aa)    
Predicted Functional Partners:
AKJ00079.1
Dehydrogenase flavoprotein LodB.
  
     0.707
AKJ00241.1
Phytoene synthase.
 
  
 0.687
AKJ00923.1
Sensory box histidine kinase.
       0.625
AKJ00924.1
Hydroxymethylpyrimidine ABC transporter, substrate-binding component.
       0.625
AKI98907.1
Phytoene synthase.
 
  
 0.568
AKJ06942.1
Electron transfer flavoprotein, beta subunit.
  
 
 0.538
rlmN
Ribosomal RNA large subunit methyltransferase N; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.
 
     0.515
AKJ06941.1
Electron transfer flavoprotein, alpha subunit.
  
 
 0.513
AKJ00921.1
Hypothetical protein.
       0.497
AKJ08473.1
Neurosporene desaturase.
 
  
 0.439
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
Server load: low (40%) [HD]